PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01888.1.g00140.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 500aa    MW: 53942.6 Da    PI: 8.8045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01888.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18283333255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ +Aa+a+++a+  ++g
  Zpz_sc01888.1.g00140.1.am.mk 283 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVDAARAYDRAAFGMRG 333
                                   8********.**********96554..**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-31282342IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22283342IPR016177DNA-binding domain
CDDcd000181.08E-17283342No hitNo description
SMARTSM003804.8E-36283347IPR001471AP2/ERF domain
PROSITE profilePS5103223.472283341IPR001471AP2/ERF domain
PfamPF008472.2E-12283333IPR001471AP2/ERF domain
PRINTSPR003671.3E-12284295IPR001471AP2/ERF domain
PRINTSPR003671.3E-12323343IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MATDSSRLSL RRTSPVHLLQ VVAWSAHRHG VKAGEMNQSA RPQLHGLQAT SSGHRLYVRA  60
SSRPLACRRR SSSNIISHDP GARSILCSSD ERQYIAKART LDTSLLPVRA RVPVSRPHGF  120
CRLILACARD QERPPELYSD MDFTGDADNF ALDFGLIREH LLGGSSGVPE ASPVVSGDAS  180
FIVQAPHSAE LCQSMAFLPQ QQHFEYIDMK HEYMGSAAPA VSGCEAAFSF RAAQEPAAPV  240
MIKFGSAPSS PARQAPLTIS VPPSSYAWAA PAAAPALVED YRKYRGVRQR PWGKYAAEIR  300
DPKRRGSRVW LGTYDTPVDA ARAYDRAAFG MRGAKAILNF PNEVGTCGAD LWTPPPAPAT  360
QGATANKRKR QQEEPDVEVV AVVNKLAKTE ASSSILTQAS SFTSPSSMST RETTATASST  420
VTSTETSTDY AGSGTEGFPA EVATSSWSLD QSWEAWLGAL TPLSPLSPHP SLGFPPLIMR  480
RAYDKAEAFN DAVQLAVSQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-25282346468ATERF1
3gcc_A5e-25282346468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126122e-67CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.13e-98putative AP2/EREBP transcription factor superfamily protein
TrEMBLB4FPJ93e-98B4FPJ9_MAIZE; Uncharacterized protein
TrEMBLK4JFF83e-98K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P011e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-33ethylene responsive element binding factor 5